#!/bin/bash

output_filtered_trad="./example/result_5sips_filtered_trad.txt"
output_bioasp="./sven/loopless_ksips_ecoli.txt"
output_bioasp_trad="./sven/loopless_ksips_ecoli_trad.txt"
diff_output="./sven/diff.txt"

echo "Translating k-SIPs - bioASP"
time java -classpath ./bin/ combi.wip.sipper.io.IObioASPkSIPs "$output_bioasp" "$output_bioasp_trad"

java -classpath ./bin/ combi.wip.sipper.exec.CompareSimple "$output_filtered_trad" "$output_bioasp_trad" "$diff_output"
